RNAcofold web server - univie.ac.at
The RNAcofold web server will predict secondary structures of single stranded RNA or DNA sequences upon dimer formation. Simply paste or upload your sequences below and click …
RNAfold web server - univie.ac.at
The RNAfold web server will predict secondary structures of single stranded RNA or DNA sequences. Current limits are 7,500 nt for partition function calculations and 10,000 nt for …
CoFold Web Server - e-RNA
CoFold is a thermodynamics-based RNA secondary structure folding algorithm that takes co-transcriptional folding in account. This has been shown to significantly improve the state-of-art …
CoFold: an RNA secondary structure prediction method that takes …
Here, we present a conceptually new method for predicting RNA secondary structure, called C o F old, that takes effects of co-transcriptional folding explicitly into account. Our method …
RNA-RNA Interaction — ViennaRNA Package - Theoretical …
In a second approach to co-folding two RNAs, cofolding is seen as a stepwise process. In the first step the probability of an unpaired region is calculated and in a second step this probability of …
COFOLD: an RNA secondary structure prediction method that …
None of the thermodynamic methods, however, consider the process of structure formation. Here, we present a conceptually new method for predicting RNA secondary structure, called CoFold, …
RNAcofold — ViennaRNA Package - Theoretical Biochemistry …
calculate secondary structures of two RNAs with dimerization. The program works much like RNAfold, but allows one to specify two RNA sequences which are then allowed to form a …
The Program RNAcofold — ViennaRNA Package
RNAcofold works much like RNAfold but uses two RNA sequences as input which are then allowed to form a dimer structure. In the input the two RNA sequences should be …
e-RNA
2022年12月19日 · Visualize RNA structure feature predictions made by CoBold to see how these relate to those of the known RNA secondary structure. Detect evolutionarily conserved RNA …
GitHub - jujubix/cofold: An RNA secondary structure prediction …
However, CoFold is primarily a modification of RNAfold, a ViennaRNA tool for calculated the minimum free energy structure given an input sequence. Purely for practical reasons, the …